SNP Profiles of PA 175 [PER] View Data

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_Input profile	GG	AT	CC	GG	CC	AA	CC	GG	CC	AA	GG	AA	AC	CT
1._RUQ_37	GG	AT	CC	GG	CC	AA	CC	GG	CC	AA	GG	AA	AC	CT
2._PA_175_[PER]	GG	AT	CC	GG	CC	AA	CC	GG	CC	AA	GG	AA	AC	CT
3._RUQ_37	_	_	CC	GG	CC	AA	CC	GG	CC	AA	_	AA	AC	CT
4._PA_175_[PER]	GG	AT	CC	GG	CC	AA	CC	GG	CC	AA	GG	AA	AC	CT
5._PA_175_[PER]	GG	AT	CC	GG	CC	AA	CC	GG	CC	AA	GG	AA	AC	CT
6._PA_175_[PER]	GG	AT	CC	GG	CC	AA	CC	GG	CC	AA	GG	AA	AC	CT
7._PA_175_[PER]	GG	AT	CC	GG	CC	AA	CC	GG	CC	AA	GG	AA	AC	CT
8._RUQ_37	_	_	CC	_	_	_	_	GG	_	_	_	_	AA	_
9._NA	GG	AT	CC	GG	CC	AA	CC	GG	CC	AA	GG	AA	AC	CT
10._NA	GG	AT	CC	GG	CC	AA	CC	GG	CC	AA	GG	AA	AC	CT
11._NA	GG	AT	CC	GG	CC	AA	CC	GG	CC	AA	GG	AA	AC	CT
12._NA	GG	AT	CC	GG	CC	AA	CC	GG	CC	AA	GG	AA	AC	CT
13._-	GG	AT	CC	CC	GG	AA	GG	GG	GG	AA	GG	_	AC	_
14._RUQ_37	GG	AT	CC	CC	GG	AA	GG	GG	GG	AA	GG	_	AC	_
15._MITC-000016	GG	AT	CC	CC	GG	AA	GG	GG	GG	AA	GG	_	AC	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GT	CG	AC	TT	AA	TT	GG	CC	CC	CT	CG	AA	TT	AA
1._RUQ_37	GT	CG	AC	TT	AA	_	GG	_	CC	CT	CG	AA	TT	AA
2._PA_175_[PER]	GT	CG	AC	TT	AA	_	GG	_	CC	CT	CG	AA	TT	AA
3._RUQ_37	GT	CG	AC	TT	_	_	GG	CC	CC	_	_	_	_	AA
4._PA_175_[PER]	GT	CG	AC	TT	GG	_	GG	_	CC	CT	CG	AA	TT	AA
5._PA_175_[PER]	GT	CG	AC	TT	GG	_	GG	_	CC	CT	CG	AA	TT	AA
6._PA_175_[PER]	GT	CG	AC	TT	GG	_	GG	_	CC	CT	CG	AA	TT	AA
7._PA_175_[PER]	GT	CG	AC	TT	GG	_	GG	_	CC	CT	CG	AA	TT	AA
8._RUQ_37	_	CG	AC	_	AA	TT	GG	_	_	_	_	_	_	AA
9._NA	GT	CG	AC	TT	GG	CG	GG	CC	CC	CT	CG	AA	TT	AA
10._NA	GT	CG	AC	TT	GG	CG	GG	CC	CC	CT	CG	AA	TT	AA
11._NA	GT	CG	AC	TT	GG	CG	GG	CC	CC	CT	CG	AA	TT	AA
12._NA	GT	CG	AC	TT	GG	CG	GG	CC	CC	CT	CG	AA	TT	AA
13._-	AC	CG	AC	AA	_	CG	CC	_	GG	AG	CG	AA	AA	AA
14._RUQ_37	AC	CG	AC	AA	_	CG	CC	_	GG	AG	CG	AA	AA	AA
15._MITC-000016	AC	CG	AC	AA	_	CG	CC	_	GG	AG	CG	AA	AA	AA

	29	30	31	32	33	34	35	36	37	38	39	40	41
_Input profile	CC	AG	AA	CC	CC	TT	CC	AC	TT	CT	CG	GG	CC	X_X
1._RUQ_37	CC	AG	AA	CC	CC	TT	CC	AC	TT	CT	CG	GG	CC	X_X
2._PA_175_[PER]	CC	AG	AA	CC	CC	TT	CC	AC	TT	CT	CG	GG	CC	X_X
3._RUQ_37	CC	_	_	_	_	TT	_	_	_	CT	CG	GG	_	X_X
4._PA_175_[PER]	CC	AG	AA	CC	CC	TT	CC	AC	TT	CT	CG	GG	CC	X_X
5._PA_175_[PER]	CC	AG	AA	CC	CC	TT	CC	AC	TT	CT	CG	GG	CC	X_X
6._PA_175_[PER]	CC	AG	AA	CC	CC	TT	CC	AC	TT	CT	CG	GG	CC	X_X
7._PA_175_[PER]	CC	AG	AA	CC	CC	TT	CC	AC	TT	CT	CG	GG	CC	X_X
8._RUQ_37	_	AG	_	CC	_	TT	_	_	_	_	CG	_	_	X_X
9._NA	CC	AG	AA	CC	CC	TT	CC	AC	TT	CT	CG	GG	CC	X_X
10._NA	CC	AG	AA	CC	CC	TT	CC	AC	TT	CT	CG	GG	CC	X_X
11._NA	CC	AG	AA	CC	CC	TT	CC	AC	TT	CT	CG	GG	CC	X_X
12._NA	CC	AG	AA	CC	CC	TT	CC	AC	TT	CT	CG	GG	CC	X_X
13._-	GG	AG	AA	_	_	AA	GG	AC	AA	AG	CG	GG	GG	X_X
14._RUQ_37	GG	AG	AA	_	_	AA	GG	AC	AA	AG	CG	GG	GG	X_X
15._MITC-000016	GG	AG	AA	_	_	AA	GG	AC	AA	AG	CG	GG	GG	X_X

Input profile: PA_175_[PER]

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5B F473 T6

Dapeng Zhang, 2014

1._PA_175_[PER] RUQ_37

identical
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._PA_175_[PER]

identical
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 738

Dapeng Zhang, 2016

3._PA_175_[PER] RUQ_37

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

4._PA_175_[PER]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8127 5

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

5._PA_175_[PER]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8127 8

Dapeng Zhang, 2016

6._PA_175_[PER]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8127 9

Dapeng Zhang, 2016

7._PA_175_[PER]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8127 12

Dapeng Zhang, 2016

8._PA_175_[PER] RUQ_37

96.2 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

9._PA_175_[PER] NA

95.1 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

10._PA_175_[PER] NA

95.1 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

11._PA_175_[PER] NA

95.1 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

12._PA_175_[PER] NA

95.1 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

13._PA_175_[PER] -

51.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 8, Block: 1, Rep: 27, Tree: 5

Notes: MCCS_Structure_refs_above_0.9membership

14._PA_175_[PER] RUQ_37

51.4 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

15._PA_175_[PER] MITC-000016

51.4 %
35 shared markers

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USDA-SHRS, United States of America

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP534	15	TcSNP560
16	TcSNP577	17	TcSNP591	18	TcSNP619	19	TcSNP645	20	TcSNP836
21	TcSNP872	22	TcSNP878	23	TcSNP891	24	TcSNP917	25	TcSNP929
26	TcSNP953	27	TcSNP994	28	TcSNP998	29	TcSNP1060	30	TcSNP1062
31	TcSNP1075	32	TcSNP1144	33	TcSNP1165	34	TcSNP1253	35	TcSNP1270
36	TcSNP1350	37	TcSNP1414	38	TcSNP1442	39	TcSNP1458	40	TcSNP1484
41	TcSNP1520